PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013630688.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 327aa    MW: 38118.7 Da    PI: 4.5585
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013630688.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix38.92.2e-1284165586
        trihelix   5 qevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     qe  + +e+  ++  +l+r++l+  +W ev++k+ +e   ers +qC+   +nl+++ykk++    k +   ss++++f++++
  XP_013630688.1  84 QEAFVVLEVWGDRFLQLGRRSLRNEDWNEVAEKVsEELRSERSETQCRRMVDNLKRKYKKERIKVDK-SGLGSSKWSFFNKMD 165
                     667777888888888999****************777889********************9987777.589999********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.4E-1783167No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MGDSEDETGY PKKFYPLNRQ THPMYTRPIP KRHAYYHEED DDEEEQEDEG GGGGGYSHRE  60
RFQKRLKPTK HDFSSGPSET KAEQEAFVVL EVWGDRFLQL GRRSLRNEDW NEVAEKVSEE  120
LRSERSETQC RRMVDNLKRK YKKERIKVDK SGLGSSKWSF FNKMDMLLGG GSSAKPEFGL  180
ACGVDSGEFV FMNTKVYLEK SNGFDEMMDS PGASEEDDDD EEEEVEYERR RKKGDDAASY  240
KLLAESVERF GKVYEKMERS KKEQMKELEK MRGEFQRDLE LQKKQIVERA QSEIARLREE  300
EEENHHDDGG ESEDEGMEND SDVNLSD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013630688.10.0PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLA0A0D3BD270.0A0A0D3BD27_BRAOL; Uncharacterized protein
STRINGBra001951.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97792733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.11e-147Trihelix family protein